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Parse Biosciences evercode wt mega v2 barcoding plates
Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
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Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
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Parse Biosciences barcoding round 1 plate
Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
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Pacific Biosciences barcoded universal f r primers plate
Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
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Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
Ra200 Evercode Wt Mega V2 Barcoding Plates Parse Biosciences, supplied by Parse Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Greiner Bio barcoded 384 well imaging plates
Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
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10X Genomics 384 well plate first barcoding 10x genomics
Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
384 Well Plate First Barcoding 10x Genomics, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
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Pacific Biosciences barcoded universal f r primers plate 96
Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
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Image Search Results


Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample barcoding plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).

Journal: Cell Genomics

Article Title: Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation

doi: 10.1016/j.xgen.2025.101108

Figure Lengend Snippet: Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample barcoding plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).

Article Snippet: Evercode WT Mega v2 Barcoding Plates , Parse Biosciences , Cat# RP100.

Techniques: Derivative Assay, Expressing